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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2177500_2177716_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2177500 - 2177716
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCATATATCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTTCATAATT
Flanking Amino Acid:
NEKLQLQFNLHVFKLEQEEY
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
72.1
33.4
Major BPS
100
1.24
0.5
100
0
Major PPT
70.7
0.47
1
63.2
42.3
Minor 5ss
46.7
-0.3
2.4
56
43.5
Minor BPS
69.5
0.69
1.6
85.41
34.6

Associated Gene:

Gene:
MYO5C
Ensembl Gene ID:
ENSAPLG00000023919
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029054
2152638 - 2187132
34495