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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2178565_2179153_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2178565 - 2179153
Intron Length:
589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGGAAG
5'SS Class:
major
3'SS Sequence:
TTTATCTTTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATCTTTAAAG
Flanking Amino Acid:
AVGDERSSISPEDSHLNIFC
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.2
62.5
43.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.1
0.63
1
78.8
33.5
Minor 5ss
33.6
-1.9
3.2
40.5
45.5
Minor BPS
72.6
0.57
1.4
73.64
38.5

Associated Gene:

Gene:
MYO5C
Ensembl Gene ID:
ENSAPLG00000023919
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029054
2152638 - 2187132
34495