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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2179261_2179793_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2179261 - 2179793
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATTTAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATTTTTAAAAT
Flanking Amino Acid:
VETQKTFALLGLKEDFQMDI
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
76.8
34.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
41.5
-0.9
2.9
50
46.3
Minor BPS
54.7
0.23
1.7
72.15
38.8

Associated Gene:

Gene:
MYO5C
Ensembl Gene ID:
ENSAPLG00000023919
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029054
2152638 - 2187132
34495