About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2179902_2180463_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2179902 - 2180463
Intron Length:
562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTCTC
5'SS Class:
major
3'SS Sequence:
TTCGTGTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTCCATCATT
Flanking Amino Acid:
MQPEFQHLKLGSAEEFNYTR
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.1
67.1
44.6
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
74
0.54
0.9
65.8
41
Minor 5ss
36.9
-1.5
3.3
44.4
43.5
Minor BPS
64.8
0.55
2
88.85
36.2

Associated Gene:

Gene:
MYO5C
Ensembl Gene ID:
ENSAPLG00000023919
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029054
2152638 - 2187132
34495