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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2180546_2181441_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2180546 - 2181441
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTGCTTTCATT
Flanking Amino Acid:
LLEKSRVVFQSENERNYHIF
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
86.3
0.82
0.7
80.3
30.6
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
63
0.49
1.8
82.98
39.3

Associated Gene:

Gene:
MYO5C
Ensembl Gene ID:
ENSAPLG00000023919
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029054
2152638 - 2187132
34495