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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2183232_2183946_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2183232 - 2183946
Intron Length:
715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGGAGA
5'SS Class:
major
3'SS Sequence:
TTTTTGTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TATTTTGTGATG
Flanking Amino Acid:
FLQVQLEDGTEINYPVDPAA
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
63
42.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79.6
0.67
0.9
81.2
36.5
Minor 5ss
34.5
-1.8
3.3
49.5
46.5
Minor BPS
47.8
-0.3
2
57.75
38.8

Associated Gene:

Gene:
MYO5C
Ensembl Gene ID:
ENSAPLG00000023919
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029054
2152638 - 2187132
34495