About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2193055_2194330_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2193055 - 2194330
Intron Length:
1276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCAAA
5'SS Class:
major
3'SS Sequence:
TTGTTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
TTGTTCTTTACA
Flanking Amino Acid:
SMCNALTTAQIVKVLNLYTP
Intron Amino Acid Position:
1808

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.2
74.1
38.3
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
89
0.88
0.7
84
31
Minor 5ss
44.2
-0.6
2.7
57.2
47.1
Minor BPS
70.2
0.63
1.6
78.67
37.8

Associated Gene:

Gene:
MYO5A
Ensembl Gene ID:
ENSAPLG00000003054
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026930
2190292 - 2270689
80398
ENSAPLT00000003317
2190292 - 2270689
80398
ENSAPLT00000048006
2190292 - 2270689
80398