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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2194506_2195328_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2194506 - 2195328
Intron Length:
823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAGAG
5'SS Class:
major
3'SS Sequence:
ACTCTTTGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GTATTCTTAACT
Flanking Amino Acid:
MCSWSKGMQIRYNVSQLEEW
Intron Amino Acid Position:
1749

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
62.1
38.7
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
77.3
0.61
0.9
72
37.4
Minor 5ss
22.9
-3.1
3.3
27.9
44.1
Minor BPS
82.5
1.1
1
89.57
34.2

Associated Gene:

Gene:
MYO5A
Ensembl Gene ID:
ENSAPLG00000003054
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048006
2190292 - 2270689
80398
ENSAPLT00000026930
2190292 - 2270689
80398
ENSAPLT00000003317
2190292 - 2270689
80398