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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2199225_2199604_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2199225 - 2199604
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTCCCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTATGGATGACA
Flanking Amino Acid:
EQKLVKNLILELKPRGVAVN
Intron Amino Acid Position:
1523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
69.4
0.44
1
68
37.9
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
43.6
-0.5
2.6
64.06
42.2

Associated Gene:

Gene:
MYO5A
Ensembl Gene ID:
ENSAPLG00000003054
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048006
2190292 - 2270689
80398
ENSAPLT00000026930
2190292 - 2270689
80398
ENSAPLT00000003317
2190292 - 2270689
80398