About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2205296_2207856_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2205296 - 2207856
Intron Length:
2561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAGTT
5'SS Class:
major
3'SS Sequence:
TCAACTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TGTTGCTCAACT
Flanking Amino Acid:
QAYIGLKETNRLLESQLQSQ
Intron Amino Acid Position:
1349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
72.5
37.2
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
68
0.41
0.8
66
35.5
Minor 5ss
34.6
-1.7
3.8
55.8
48.4
Minor BPS
64.8
0.54
2
85.32
40.8

Associated Gene:

Gene:
MYO5A
Ensembl Gene ID:
ENSAPLG00000003054
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026930
2190292 - 2270689
80398