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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2207958_2210694_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2207958 - 2210694
Intron Length:
2737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAGT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TTAAATTTACCC
Flanking Amino Acid:
VSQKEAIQPKNTMTDSTILL
Intron Amino Acid Position:
1316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
71.6
0.54
1
72
33.1
Major PPT
85.9
0.81
0.8
77.7
36.1
Minor 5ss
36.8
-1.5
2.9
51.6
44.9
Minor BPS
50.3
-0
1.8
64.92
40.4

Associated Gene:

Gene:
MYO5A
Ensembl Gene ID:
ENSAPLG00000003054
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048006
2190292 - 2270689
80398
ENSAPLT00000026930
2190292 - 2270689
80398
ENSAPLT00000003317
2190292 - 2270689
80398