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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2215345_2216228_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2215345 - 2216228
Intron Length:
884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTGCT
5'SS Class:
major
3'SS Sequence:
TTCTCCGTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GAGTTCTCACTT
Flanking Amino Acid:
RIHDQAKEITEAMEKKLVEE
Intron Amino Acid Position:
1085

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.2
70.9
39.4
Major BPS
85
0.87
0.8
85.6
23
Major PPT
72.3
0.5
1
68.9
37.1
Minor 5ss
30.3
-2.3
3.3
42
44.7
Minor BPS
47.6
-0.1
1.8
61.53
42.7

Associated Gene:

Gene:
MYO5A
Ensembl Gene ID:
ENSAPLG00000003054
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026930
2190292 - 2270689
80398
ENSAPLT00000003317
2190292 - 2270689
80398
ENSAPLT00000048006
2190292 - 2270689
80398