Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2222286_2223225_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2222286 - 2223225

Intron Length:

940

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGCAGC

5'SS Class:

strong_major

3'SS Sequence:

GTTTCTTGTATAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTAAT

U12 Branch Point Sequence:

ATTACTGTAATG

Flanking Amino Acid:

QRYVRGYQARCYATFLRRTR

Intron Amino Acid Position:

838

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

68.8

42.2

Major BPS

77.9

0.69

0.8

75.9

Major PPT

76.9

0.61

0.9

72.7

37.6

Minor 5ss

39.9

-1.1

2.9

41.5

Minor BPS

50.7

-0.1

2.1

62.04

40.5

Associated Gene:

Gene:

MYO5A

Ensembl Gene ID:

ENSAPLG00000003054

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048006

2190292 - 2270689

80398

ENSAPLT00000026930

2190292 - 2270689

80398

ENSAPLT00000003317

2190292 - 2270689

80398