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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2223438_2224587_R

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2223438 - 2224587
Intron Length:
1150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACTAGAC
5'SS Class:
major
3'SS Sequence:
CCTTTGAAAATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATCTTTTTACCT
Flanking Amino Acid:
CKNVLEKLILDKDKYQFGKT
Intron Amino Acid Position:
768

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63
0.31
1.1
55.2
36.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
59.8
0.22
1
55.6
38
Minor 5ss
29.9
-2.3
3.5
38.2
42.1
Minor BPS
62.8
0.48
1.6
77.06
40.2

Associated Gene:

Gene:
MYO5A
Ensembl Gene ID:
ENSAPLG00000003054
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048006
2190292 - 2270689
80398
ENSAPLT00000026930
2190292 - 2270689
80398
ENSAPLT00000003317
2190292 - 2270689
80398