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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2224697_2224795_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2224697 - 2224795
Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATGGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTATGGAACA
Flanking Amino Acid:
IRISAAGFPSRWTYQEFFSR
Intron Amino Acid Position:
731

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
35
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
69.6
0.44
1.1
65.9
44
Minor 5ss
44.5
-0.6
2.7
57.3
47.4
Minor BPS
49.4
-0
2.2
73.11
38.7

Associated Gene:

Gene:
MYO5A
Ensembl Gene ID:
ENSAPLG00000003054
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026930
2190292 - 2270689
80398
ENSAPLT00000003317
2190292 - 2270689
80398
ENSAPLT00000048006
2190292 - 2270689
80398