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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2229578_2232015_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2229578 - 2232015
Intron Length:
2438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTACTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTTGGTAAAA
Flanking Amino Acid:
AFIIKHFADKVEYQCEGFLE
Intron Amino Acid Position:
587

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
83.2
0.75
0.9
80.7
36.7
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
47.2
-0.2
2.6
71.75
40.6

Associated Gene:

Gene:
MYO5A
Ensembl Gene ID:
ENSAPLG00000003054
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026930
2190292 - 2270689
80398
ENSAPLT00000003317
2190292 - 2270689
80398
ENSAPLT00000048006
2190292 - 2270689
80398