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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2232142_2232893_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2232142 - 2232893
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTACGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GTTCTCTTACGC
Flanking Amino Acid:
ILDLLDEECKMPKGSDDTWA
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
85.7
25.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
80.1
0.68
0.8
76.8
30.7
Minor 5ss
46.8
-0.3
2.7
66.4
45.1
Minor BPS
49.8
-0
1.9
63.92
41.7

Associated Gene:

Gene:
MYO5A
Ensembl Gene ID:
ENSAPLG00000003054
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048006
2190292 - 2270689
80398
ENSAPLT00000026930
2190292 - 2270689
80398
ENSAPLT00000003317
2190292 - 2270689
80398