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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2239212_2240713_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2239212 - 2240713
Intron Length:
1502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
ALPEFKTLRLGNANYFHYTK
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
82.4
29.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.7
0.96
0.7
87.8
29.3
Minor 5ss
41.2
-1
2.9
57.1
47.2
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
MYO5A
Ensembl Gene ID:
ENSAPLG00000003054
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048006
2190292 - 2270689
80398
ENSAPLT00000026930
2190292 - 2270689
80398
ENSAPLT00000003317
2190292 - 2270689
80398