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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2261573_2268814_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2261573 - 2268814
Intron Length:
7242

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTG|GCAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTATTAATAACT
Flanking Amino Acid:
IDSKLIYTYCGIVLVAINPY
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
1
88.3
26.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80.2
0.68
0.8
74.7
29.7
Minor 5ss
28.2
-2.5
3.8
40.7
39.2
Minor BPS
53.4
0.18
1.9
74.76
41.6

Associated Gene:

Gene:
MYO5A
Ensembl Gene ID:
ENSAPLG00000003054
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048006
2190292 - 2270689
80398
ENSAPLT00000026930
2190292 - 2270689
80398
ENSAPLT00000003317
2190292 - 2270689
80398