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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2296706_2300034_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2296706 - 2300034
Intron Length:
3329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTTCT
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AGGCTTTTAAAT
Flanking Amino Acid:
DFLRKRLQKGQKYFDSGDYN
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1
71.2
35.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85
0.79
0.7
77.9
36.6
Minor 5ss
38.7
-1.3
2.9
47.2
42.3
Minor BPS
54.8
0.23
1.4
65.47
38.9

Associated Gene:

Gene:
ARPP19
Ensembl Gene ID:
ENSAPLG00000024461
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042726
2295535 - 2300154
4620