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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2305790_2310407_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2305790 - 2310407
Intron Length:
4618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTATATATAATA
Flanking Amino Acid:
ERLLRYLIHLRFQSSKSGKI
Intron Amino Acid Position:
1047

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.3
32.2
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
87.1
0.83
0.8
85.3
34.4
Minor 5ss
48.4
-0.1
2.8
67.4
44
Minor BPS
55.5
0.17
1.7
70.21
35.7

Associated Gene:

Gene:
FAM214A
Ensembl Gene ID:
ENSAPLG00000009208
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034808
2304542 - 2340773
36232
ENSAPLT00000023121
2304542 - 2328026
23485
ENSAPLT00000009626
2304542 - 2348233
43692
ENSAPLT00000036408
2304542 - 2329070
24529