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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2310608_2311455_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2310608 - 2311455
Intron Length:
848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGTACG
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TTGTATTGAACC
Flanking Amino Acid:
RVPPSGTIQVTLFNPNKTVV
Intron Amino Acid Position:
981

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
68.2
42.6
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
90.7
0.92
0.6
84.9
29.9
Minor 5ss
35.1
-1.7
2.8
40.1
40.7
Minor BPS
61.1
0.33
1.6
72.22
38.7

Associated Gene:

Gene:
FAM214A
Ensembl Gene ID:
ENSAPLG00000009208
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034808
2304542 - 2340773
36232
ENSAPLT00000023121
2304542 - 2328026
23485
ENSAPLT00000009626
2304542 - 2348233
43692
ENSAPLT00000036408
2304542 - 2329070
24529