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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2311525_2313619_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2311525 - 2313619
Intron Length:
2095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
ACCCTGTTAACT
Flanking Amino Acid:
SDDNAPSPYMGVITLESLGK
Intron Amino Acid Position:
958

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
83.2
28.5
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
91.7
0.94
0.6
84.4
30.5
Minor 5ss
36.4
-1.5
3.3
45.9
43.7
Minor BPS
49.9
0.07
2.1
66.82
44.1

Associated Gene:

Gene:
FAM214A
Ensembl Gene ID:
ENSAPLG00000009208
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036408
2304542 - 2329070
24529
ENSAPLT00000034808
2304542 - 2340773
36232
ENSAPLT00000023121
2304542 - 2328026
23485
ENSAPLT00000009626
2304542 - 2348233
43692