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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2313779_2314619_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2313779 - 2314619
Intron Length:
841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCAT
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TCATTCCCAACC
Flanking Amino Acid:
TSLSLLGNFEESVLNFRLDP
Intron Amino Acid Position:
905

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
71.5
39.9
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
32.5
-2
3.4
47.3
48.1
Minor BPS
49.9
-0
1.9
63.96
41.3

Associated Gene:

Gene:
FAM214A
Ensembl Gene ID:
ENSAPLG00000009208
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034808
2304542 - 2340773
36232
ENSAPLT00000023121
2304542 - 2328026
23485
ENSAPLT00000009626
2304542 - 2348233
43692
ENSAPLT00000036408
2304542 - 2329070
24529