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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2315971_2316979_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2315971 - 2316979
Intron Length:
1009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTTAT
5'SS Class:
major
3'SS Sequence:
TTTCCCTTTTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CAGTTTTCAAAT
Flanking Amino Acid:
RTGLPLLSSPVPQRKTQSGC
Intron Amino Acid Position:
842

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
77.3
33.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
68.3
0.41
1.7
80.8
31.1
Minor 5ss
44.8
-0.6
2.9
68.1
42.7
Minor BPS
48.9
-0
1.6
61.85
42.3

Associated Gene:

Gene:
FAM214A
Ensembl Gene ID:
ENSAPLG00000009208
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036408
2304542 - 2329070
24529
ENSAPLT00000034808
2304542 - 2340773
36232
ENSAPLT00000023121
2304542 - 2328026
23485
ENSAPLT00000009626
2304542 - 2348233
43692