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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2317097_2317593_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2317097 - 2317593
Intron Length:
497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAGG
5'SS Class:
major
3'SS Sequence:
GTTTTGCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
AATATCTTGAGT
Flanking Amino Acid:
CERLKNPDMQKAPSLKHTNI
Intron Amino Acid Position:
803

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
66
45.4
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
73.7
0.53
1.1
69.6
41.6
Minor 5ss
38.1
-1.3
2.9
48.8
47
Minor BPS
55.1
0.24
1.7
70.53
40.3

Associated Gene:

Gene:
FAM214A
Ensembl Gene ID:
ENSAPLG00000009208
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009626
2304542 - 2348233
43692
ENSAPLT00000036408
2304542 - 2329070
24529
ENSAPLT00000034808
2304542 - 2340773
36232
ENSAPLT00000023121
2304542 - 2328026
23485