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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2393185_2407766_R

Intron Information:

Intron Rank:
148947
Intron Class:
major
Intron Phase:
Intron Coordinates:
2393185 - 2407766
Intron Length:
14582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
73.3
37.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.7
0.6
0.7
69.5
31.2
Minor 5ss
34.6
-1.7
2.8
39.6
39.8
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027590
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030900
2393077 - 2447854
54778
ENSAPLT00000044803
2393077 - 2482938
89862