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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2407895_2482802_R

Intron Information:

Intron Rank:
148950
Intron Class:
major
Intron Phase:
Intron Coordinates:
2407895 - 2482802
Intron Length:
74908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGATCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CCTTTCTGATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.1
24.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
75.3
0.57
0.9
69
36.2
Minor 5ss
31.8
-2.1
3
37.8
47
Minor BPS
51.7
0.03
1.8
62.26
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027590
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044803
2393077 - 2482938
89862