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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2411954_2413596_R

Intron Information:

Intron Rank:
155505
Intron Class:
major
Intron Phase:
Intron Coordinates:
2411954 - 2413596
Intron Length:
1643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGAGGG
5'SS Class:
major
3'SS Sequence:
TTGTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ACTTATTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
54.9
42.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
88.8
0.87
0.7
84.5
30.4
Minor 5ss
32
-2.1
3.4
44
44.4
Minor BPS
60.1
0.31
1.6
67.93
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031163
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017726
2410914 - 2413820
2907