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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2508204_2509176_F

Intron Information:

Intron Rank:
147865
Intron Class:
major
Intron Phase:
Intron Coordinates:
2508204 - 2509176
Intron Length:
973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
CCAGCCTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
84.7
28.3
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
79.4
0.66
0.8
73.3
31.8
Minor 5ss
37.2
-1.4
3.5
55
49.2
Minor BPS
67.2
0.52
1.5
66.7
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029603
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040307
2508077 - 2512335
4259