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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2509899_2512219_F

Intron Information:

Intron Rank:
147866
Intron Class:
major
Intron Phase:
Intron Coordinates:
2509899 - 2512219
Intron Length:
2321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.8
81.9
26.2
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
38.5
-1.3
2.9
45.9
43.7
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029603
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040307
2508077 - 2512335
4259