About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2588742_2592437_R

Intron Information:

Intron Rank:
129509
Intron Class:
major
Intron Phase:
Intron Coordinates:
2588742 - 2592437
Intron Length:
3696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CATGCCTGTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATCCAT
U12 Branch Point Sequence:
TCTTCTATATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
69.5
0.49
1.2
78.7
34.9
Major PPT
64
0.32
1
57.4
38.3
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
56.1
0.17
1.9
70.85
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016873
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041757
2588430 - 2605977
17548