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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2591086_2592437_R

Intron Information:

Intron Rank:
129506
Intron Class:
major
Intron Phase:
Intron Coordinates:
2591086 - 2592437
Intron Length:
1352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
AATATATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
GTATATTTAAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
70.4
0.46
1
63.6
42
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
50.9
-0.1
1.9
57.91
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016873
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026707
2590735 - 2605977
15243