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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2591890_2592437_R

Intron Information:

Intron Rank:
129511
Intron Class:
major
Intron Phase:
Intron Coordinates:
2591890 - 2592437
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTAAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAA
U12 Branch Point Sequence:
TCTTCCTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
65.4
0.38
1.4
75.9
36.3
Major PPT
69.4
0.44
1.1
71.7
31.8
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
81.7
0.99
1.2
84.76
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016873
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045024
2591784 - 2605977
14194