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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2592571_2605878_R

Intron Information:

Intron Rank:
129507
Intron Class:
major
Intron Phase:
Intron Coordinates:
2592571 - 2605878
Intron Length:
13308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CTATTCTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTTTTTCTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
74.3
0.55
0.9
73.5
36.8
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
51.7
0.03
1.9
70.01
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016873
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045024
2591784 - 2605977
14194
ENSAPLT00000041757
2588430 - 2605977
17548
ENSAPLT00000026707
2590735 - 2605977
15243