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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2606169_2606265_R

Intron Information:

Intron Rank:
129508
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
2606169 - 2606265
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-GG
5'SS Sequence:
CCA|GTGAGCGGT
5'SS Class:
major
3'SS Sequence:
CTTTTCACCACGG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGCTTTTCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.1
57.2
42.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
43.7
-0.3
3.2
65.8
34.7
Minor 5ss
34.8
-1.7
3.5
52
45.9
Minor BPS
54.4
0.12
1.7
66.7
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016873
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038950
2604872 - 2606412
1541