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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2617991_2634945_R

Intron Information:

Intron Rank:
146956
Intron Class:
major
Intron Phase:
Intron Coordinates:
2617991 - 2634945
Intron Length:
16955

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGATTTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
79
35.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
86.2
0.81
0.6
85
22.5
Minor 5ss
34.3
-1.8
3.4
50.5
46
Minor BPS
77.2
0.93
1.1
85.13
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026365
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046188
2617784 - 2643683
25900
ENSAPLT00000042113
2616581 - 2635902
19322
ENSAPLT00000035546
2616581 - 2635050
18470