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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2635129_2635657_R

Intron Information:

Intron Rank:
146959
Intron Class:
major
Intron Phase:
Intron Coordinates:
2635129 - 2635657
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
AAGTACTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
92.8
0.96
0.6
92.6
17.4
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
62.4
0.47
1.6
74.47
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026365
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042113
2616581 - 2635902
19322