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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2753702_2755989_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2753702 - 2755989
Intron Length:
2288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTATATTTTACT
Flanking Amino Acid:
LLVVSSICWQVYDYCDFSLL
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
72.3
0.5
0.9
73
31.9
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
61.7
0.45
1.8
81.87
39.2

Associated Gene:

Gene:
WDR72
Ensembl Gene ID:
ENSAPLG00000009012
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009374
2749589 - 2764985
15397