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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2758665_2760772_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2758665 - 2760772
Intron Length:
2108

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAG|GCACACAGC
5'SS Class:
major
3'SS Sequence:
ACTCTGTTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GGATTTTAAACA
Flanking Amino Acid:
QCIENTKLPYRYLSLTT*
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
65.3
42.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
67.9
0.4
0.9
66.7
38.7
Minor 5ss
27.7
-2.6
4
43.1
44.1
Minor BPS
53.4
0.1
1.6
61.07
39

Associated Gene:

Gene:
WDR72
Ensembl Gene ID:
ENSAPLG00000009012
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041676
2758643 - 2764985
6343