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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2763742_2764832_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2763742 - 2764832
Intron Length:
1091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTGTC
5'SS Class:
major
3'SS Sequence:
ATTATTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
TTTAAGTTAAAC
Flanking Amino Acid:
CLWDLSSQLKISSKEILFGH
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
73.5
35.7
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
74.4
0.55
0.9
66.7
39.9
Minor 5ss
39.7
-1.2
3.1
52.8
44.4
Minor BPS
49
-0
2.3
69.75
41

Associated Gene:

Gene:
WDR72
Ensembl Gene ID:
ENSAPLG00000009012
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041676
2758643 - 2764985
6343