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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2904436_2910722_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2904436 - 2910722
Intron Length:
6287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
ACTGTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ACATGTTTAATT
Flanking Amino Acid:
LNPVWDEKFYFECHNSTDRI
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
77.9
31.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.4
0.73
0.9
76
37.4
Minor 5ss
36.4
-1.5
2.9
48.3
41.8
Minor BPS
58.3
0.34
1.7
70.49
41.3

Associated Gene:

Gene:
UNC13C
Ensembl Gene ID:
ENSAPLG00000007445
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007770
2892909 - 2993043
100135