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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2913440_2920432_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2913440 - 2920432
Intron Length:
6993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGAATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TTTGTTTGAATT
Flanking Amino Acid:
YGIEYIYQAMTHFSCLSSKY
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.2
90.9
28.7
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
74.7
0.56
1
66.5
43.2
Minor 5ss
43
-0.8
2.9
59.7
38
Minor BPS
62.5
0.47
1.5
79.72
37

Associated Gene:

Gene:
UNC13C
Ensembl Gene ID:
ENSAPLG00000007445
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007770
2892909 - 2993043
100135