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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2920584_2924028_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2920584 - 2924028
Intron Length:
3445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTTTACA
Flanking Amino Acid:
SDRFAATNFGREKFIKLLDQ
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78
38.6
Major BPS
100
1.24
0.5
100
0
Major PPT
89.1
0.88
0.7
83.7
30.9
Minor 5ss
34.7
-1.7
2.6
34.1
41.4
Minor BPS
57.3
0.22
1.8
73.99
37

Associated Gene:

Gene:
UNC13C
Ensembl Gene ID:
ENSAPLG00000007445
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007770
2892909 - 2993043
100135