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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2924098_2925392_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2924098 - 2925392
Intron Length:
1295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACGTGCA
5'SS Class:
major
3'SS Sequence:
CCTGATTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTTCCTGATTC
Flanking Amino Acid:
SLRIDLSKYRDNFPASNSER
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.1
66.1
39.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
67.5
0.39
1
61.7
38.6
Minor 5ss
31.5
-2.1
3.2
32.6
42.2
Minor BPS
60.3
0.3
1.7
71.02
40.7

Associated Gene:

Gene:
UNC13C
Ensembl Gene ID:
ENSAPLG00000007445
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007770
2892909 - 2993043
100135