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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2925483_2926081_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2925483 - 2926081
Intron Length:
599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTCC
5'SS Class:
major
3'SS Sequence:
AATATTTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGATTCTGAAAT
Flanking Amino Acid:
LTSITFFRMKVLELQSPPRA
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
62
37.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
67
0.38
1
60.1
45
Minor 5ss
44.2
-0.6
3
60
44.7
Minor BPS
61.3
0.43
1.5
76.05
39.7

Associated Gene:

Gene:
UNC13C
Ensembl Gene ID:
ENSAPLG00000007445
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007770
2892909 - 2993043
100135