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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2933003_2939566_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2933003 - 2939566
Intron Length:
6564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TGATTGATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
ATGTGATTGATT
Flanking Amino Acid:
DKTAYTPVLNQFPQELNMGK
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
81.1
32.8
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
73.5
0.53
1
66.6
43.7
Minor 5ss
39.6
-1.2
2.9
57
41.2
Minor BPS
49
0
2
70.06
41.3

Associated Gene:

Gene:
UNC13C
Ensembl Gene ID:
ENSAPLG00000007445
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007770
2892909 - 2993043
100135