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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2952762_2953189_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2952762 - 2953189
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CAAGTATTAACT
Flanking Amino Acid:
GALERDKKDGFQQTSDHALF
Intron Amino Acid Position:
644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.4
40.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
83.8
0.76
0.7
77.2
31.6
Minor 5ss
31
-2.2
2.9
34.5
41
Minor BPS
52.5
0.16
1.7
66.68
43.7

Associated Gene:

Gene:
UNC13C
Ensembl Gene ID:
ENSAPLG00000007445
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007770
2892909 - 2993043
100135