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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2965850_2967495_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2965850 - 2967495
Intron Length:
1646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GGTTTTATTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGGTTTTATT
Flanking Amino Acid:
LRPLMDFLDKTLSLCAKICE
Intron Amino Acid Position:
804

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1.3
81.8
38.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
79.4
0.66
0.9
70.4
44.5
Minor 5ss
40.7
-1
2.8
50.8
39
Minor BPS
49.3
0.03
2.1
74.98
42.6

Associated Gene:

Gene:
UNC13C
Ensembl Gene ID:
ENSAPLG00000007445
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007770
2892909 - 2993043
100135