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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2967635_2974454_F

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2967635 - 2974454
Intron Length:
6820

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCT|GCAGGTCAC
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGATTATTATTT
Flanking Amino Acid:
LTDQTVSVTAQYFHAGGSGL
Intron Amino Acid Position:
851

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.2
0.22
1.5
58.8
42.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
25.7
-2.8
4.1
44.4
43.5
Minor BPS
50.8
0.1
1.8
70.46
40.5

Associated Gene:

Gene:
UNC13C
Ensembl Gene ID:
ENSAPLG00000007445
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007770
2892909 - 2993043
100135